- #Imagej software free download latest version update#
- #Imagej software free download latest version manual#
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After this 2 new commands should appear: Image>Adjust>Auto Threshold and Image>Adjust>Auto Local Threshold. Copy the jar file into the ImageJ/Plugins folder and either restart ImageJ or run the Help>Update Menus command. and version 1.6 of the Anaglyph plugin also expects the new file name.Īuto_Threshold and Auto_Local_Threshold ( link to jar file, source included) These plugins binarise 8-bit images using various global (histogram-derived) and local (adaptive) thresholding methods.
#Imagej software free download latest version update#
The plugin has been tested with only a small number of slices (6~20), so please report any problems.Ī recent update of the Extended Depth of Field plugin changed the name of the “Topology” image to “Height Map”. Because it cannot be known in advance the acquisition direction of the Z sequence, it may be necessary to invert the view sides when checking the red-cyan anaglyph. depth plane pixel values should be contiguous in the grey scale and start a 0). For Height-Map images created using other programmes, they can be 8 or 32 bits, but they should not be re-scaled (i.e.
The Anaglyph plugin expects both the “Height-Map” and “Output” images to be open (they hold the “topographical map” data and the “on focus” data). To align 48bit RGB stacks use the Align_Slice plugin.Īlign_Slice ( java & class files) This plugin allows to manually shift (move in the x and y directions) stretch and rotate a particular slice in an image stack.Īnaglyph ( java & class files) Creates colour or greyscale, red-cyan or red-green anaglyphs, stereo pairs (crossed view stereo pairs) and depth-map images from the depth data and focused image generated with the extended depth of field plugin. A set of buttons to move across the stack will appear when dealing with stacks. Thanks to Leon Espinosa for suggesting the modification to log the net movement of the planes.ġ.7 Supports stacks of RGB images. Includes a macro to resize images so they are not affected by the cropping due to the rotation. The plugin may be useful to build mosaics of smaller images.Īlign_RGB_planes ( java & class files) This plugin allows to shift (move in the x and y directions) stretch and rotate the red green and blue planes in an RGB image. Supports transparency of the active image and selection of fiducial points (an origin and a target) for easy alignment.
#Imagej software free download latest version manual#
You should have received a copy of the GNU General Public License along with the programs if not, write to the Free Software Foundation, Inc., 59 Temple Place – Suite 330, Boston, MA 02111-1307, USA.Īlign_4 ( java & class files) This plugin allows manual alignment (movements in the x and y directions) up to 4 images. See the GNU General Public License for more details.
These programs are distributed in the hope that they will be useful, but WITHOUT ANY WARRANTY without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. If no specific copyright notice is included, then consider the plugin as free software: you can redistribute it and/or modify it under the terms of the GNU General Public license as published by the Free Software Foundation either version 2 of the license, or (at your option) any later version. Please respect the original authors authorship notices. Some of the plugins are modifications of earlier versions written by other authors and therefore their original copyright notices apply.
#Imagej software free download latest version code#
Copyright notice: Please check the copyright notices in the source code of each plugin. Please send any comments, problems or improvements to. Although I have made every effort to make sure that they run as intended, there may be bugs and unexpected behaviour in instances that I have not envisaged. Please make sure that you have the latest version of the ImageJ ij.jar file Disclaimer: The software in these pages is experimental. Here are some ImageJ macros and plugins that I have written.
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